PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007989001
Common NameLOC100250157, VIT_17s0000g06340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family M-type_MADS
Protein Properties Length: 376aa    MW: 42485.8 Da    PI: 6.1931
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007989001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.63.7e-24953145
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       kr e++snrqvt+skRrngilKKA ELS+LCd+e+ +++fs+tg+
  GSVIVT01007989001  9 KRLESTSNRQVTYSKRRNGILKKARELSILCDIEIILLMFSPTGR 53
                       689****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.946161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-26295IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-20323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-201156IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IEIILLMFSP TGRPTLFHGA  60
RSDIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNLQDFLGAS TQTIEELTNQ  120
ARLLQAQLTE VHKRLSYWSN PDKVDSTEHL RQMEDSLRES LNRIRVHKEN FGKHQLMSLE  180
CASQFQNGMH LPLIMDGVQE AQPLSWLPNN ENQHLILPEE PSYLPQRDME CSADASIPGY  240
SGYYSTGKQT EIGNSGQVDE QGQEGSALNQ LSGNSNLRLQ LSEQYLYSPF GNLNLPDEKK  300
LKPEMEMNLQ GNPVDYQVNG NFEIPAPIYD NRQHTWVSAS GPCSIAMFDE NSFSQGNVPP  360
IVHSAFPDSQ QNSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-17192190Myocyte-specific enhancer factor 2B
1tqe_Q6e-17192190Myocyte-specific enhancer factor 2B
1tqe_R6e-17192190Myocyte-specific enhancer factor 2B
1tqe_S6e-17192190Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.125070.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4245420.0AM424542.2 Vitis vinifera contig VV78X158137.17, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281961.20.0PREDICTED: agamous-like MADS-box protein AGL17
RefseqXP_010663353.10.0PREDICTED: agamous-like MADS-box protein AGL17
RefseqXP_010663354.10.0PREDICTED: agamous-like MADS-box protein AGL17
SwissprotQ7X9I01e-121AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLD7SIA10.0D7SIA1_VITVI; Putative uncharacterized protein
STRINGVIT_17s0000g06340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59461119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-122AGAMOUS-like 65